Code
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xolotl: A fast (written in C++), flexible (fully object oriented) and immediate (live manipulation in MATLAB) neuron and network simulator. Also on Mathworks File Exchange
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puppeteer: A pure MATLAB class to control and manipulate models, simulations, functions...anything
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kontroller: A easy-to-use wrapper for MATLAB's DAQ toolbox
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crabsort: Interactive, automated extracellular spike sorting with machine learning
All code here is free software. You should look at my github page for other projects I'm working on.
Publications
MED13 and Glycolysis Are Conserved Modifiers of α-Synuclein-Associated Neurodegeneration
Mengda Ren, Ying Yang, Kelsey H. Y. Heng, Lu Yi Ng, Claris Chong, Yan Ting Ng, Srinivas Gorur-Shandilya, Kah Leong Lim, Jing Zhang and Tong-Wey Koh
Mapping circuit dynamics during function and dysfunction
Srinivas Gorur-Shandilya, Elizabeth M. Cronin, Anna C. Schneider, Sara Ann Haddad, Philipp Rosenbaum, Dirk Bucher, Farzan Nadim, and Eve Marder
eLife 2022 | code | interactive visualization
Coupling between fast and slow oscillator circuits in Cancer borealis is temperature compensated
Daniel Powell†, Sara Haddad†, Srinivas Gorur-Shandilya† and Eve Marder
† = equal contribution
Activity-dependent compensation of cell size is vulnerable to targeted deletion of ion channels
Srinivas Gorur-Shandilya, Eve Marder and Timothy O'Leary
Scientific Reports 2020 | code | preprint
Controlling and measuring dynamic odorant stimuli in the laboratory
Srinivas Gorur-Shandilya, Carlotta Martelli, Mahmut Demir and Thierry Emonet.
Journal of Experimental Biology 2020
Xolotl: An Intuitive and Approachable Neuron and Network Simulator for Research and Teaching
Srinivas Gorur-Shandilya†, Alec Hoyland† and Eve Marder.
Frontiers in Neuroinformatics 2018 | code | documentation
† = equal contribution
Regulation of Eag by calcium/calmodulin controls presynaptic excitability in Drosophila
Peter Bronk, Elena Kuklin, Srinivas Gorur-Shandilya, Chang Liu, Timothy Wiggin, Martha Reed, Eve Marder and Leslie Griffith
Journal of Neurophysiology 2018
Gain control in Drosophila olfactory receptor neurons
Srinivas Gorur-Shandilya
Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli
Srinivas Gorur-Shandilya†, Mahmut Demir†, Junjiajia Long, Damon A Clark and Thierry Emonet
† = equal contribution
eLife 2017 | pdf | talk based on this work at KITP
Presynaptic GABA receptors mediate temporal contrast enhancement in Drosophila olfactory sensory neurons and modulate odor-driven behavioral kinetics
Davide Raccuglia, Li Yan McCurdy, Mahmut Demir, Srinivas Gorur-Shandilya, Michael Kunst, Thierry Emonet, and Michael Nitabach
The Drosophila IR20a Clade of Ionotropic Receptors Are Candidate Taste and Pheromone Receptors
Tong-Wey Koh, Zhe He, Srinivas Gorur-Shandilya, Karen Menuz, Nikki K. Larter, Shannon Stewart and John R. Carlson
Inferring network topology from complex dynamics
Srinivas Gorur-Shandilya and Marc Timme
New Journal of Physics 2010 | direct link | code
Relating Topology and Dynamics in Neuronal Networks
Srinivas Gorur-Shandilya
Essays
Talks
Why is anything the way it is?
Lightning talk at 30C3, Hamburg, Germany. (2013)
Topology Predicts Dynamics; Dynamics Constrain Topology
invited talk at SIAM Conference on Applications of Dynamical Systems, Snowbird, USA. (2015)
Sequential gain control in Drosophila olfactory receptor neurons
accepted talk at Sense2Synapse New York, USA (2016)
Photographs
Contact me
You can write to .sg.savime@srin
About this website
This page is written in markdown using Sublime Text 3. The markdown source is here and the entire repository is available here. Most pages are rendered from markdown source. The font used here is Goudy Bookletter 1911 and is in the public domain. This website is hosted on Github servers.